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1

The CRISPRs, They Are A-Changin': How Prokaryotes Generate Adaptive Immunity

Westra, Edze R., Swarts, Daan C., Staals, Raymond H.J., Jore, Matthijs M., Brouns, Stan J.J., van der Oost, John

Journal:

Annual Review of Genetics

Year:

2012

Language:

english

File:

PDF, 859 KB

english, 2012

2

CRISPR-Cas Systems || Type II: Streptococcus thermophilus

Barrangou, Rodolphe, van der Oost, John

Year:

2013

Language:

english

File:

PDF, 3.49 MB

english, 2013

3

CRISPR-Cas Systems || Evolution and Classification of CRISPR-Cas Systems and Cas Protein Families

Barrangou, Rodolphe, van der Oost, John

Year:

2013

Language:

english

File:

PDF, 2.58 MB

english, 2013

4

CRISPR-Cas Systems || crRNA Biogenesis

Barrangou, Rodolphe, van der Oost, John

Year:

2013

Language:

english

File:

PDF, 1.91 MB

english, 2013

5

Next Generation Prokaryotic Engineering: The CRISPR-Cas Toolkit

Mougiakos, Ioannis, Bosma, Elleke F., de Vos, Willem M., van Kranenburg, Richard, van der Oost, John

Journal:

Trends in Biotechnology

Year:

2016

Language:

english

File:

PDF, 1.83 MB

english, 2016

6

Healthy human gut phageome

Manrique, Pilar, Bolduc, Benjamin, Walk, Seth T., van der Oost, John, de Vos, Willem M., Young, Mark J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.38 MB

english, 2016

7

Structures of the RNA-guided surveillance complex from a bacterial immune system

Wiedenheft, Blake, Lander, Gabriel C., Zhou, Kaihong, Jore, Matthijs M., Brouns, Stan J. J., van der Oost, John, Doudna, Jennifer A., Nogales, Eva

Journal:

Year:

2011

Language:

english

File:

PDF, 1.28 MB

english, 2011

8

CRISPR-Cas Systems || Regulation of CRISPR-Based Immune Responses

Barrangou, Rodolphe, van der Oost, John

Year:

2013

Language:

english

File:

PDF, 2.00 MB

english, 2013

9

Synthesis of non-natural carbohydrates from glycerol and aldehydes in a one-pot four-enzyme cascade reaction

Babich, Lara, van Hemert, Lieke J. C., Bury, Aleksandra, Hartog, Aloysius F., Falcicchio, Pierpaolo, van der Oost, John, van Herk, Teunie, Wever, Ron, Rutjes, Floris P. J. T.

Journal:

Green Chemistry

Year:

2011

Language:

english

File:

PDF, 317 KB

english, 2011

10

Alternative affinity tools: more attractive than antibodies?

Ruigrok, Vincent J. B., Levisson, Mark, Eppink, Michel H. M., Smidt, Hauke, van der Oost, John

Journal:

Biochemical Journal

Year:

2011

Language:

english

File:

PDF, 757 KB

english, 2011

11

Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes

Al-Attar, Sinan, Westra, Edze R., van der Oost, John, Brouns, Stan J.J.

Journal:

Biological Chemistry

Year:

2011

Language:

english

File:

PDF, 319 KB

english, 2011

12

The evolutionary journey of Argonaute proteins

Swarts, Daan C, Makarova, Kira, Wang, Yanli, Nakanishi, Kotaro, Ketting, René F, Koonin, Eugene V, Patel, Dinshaw J, van der Oost, John

Journal:

Nature Structural and Molecular Biology

Year:

2014

Language:

english

File:

PDF, 2.16 MB

english, 2014

13

Codon Bias as a Means to Fine-Tune Gene Expression

Quax, Tessa E.F., Claassens, Nico J., Söll, Dieter, van der Oost, John

Journal:

Year:

2015

Language:

english

File:

PDF, 1.21 MB

english, 2015

14

CRISPR sabotage

van der Oost, John, Brouns, Stan J. J.

Journal:

Year:

2015

Language:

english

File:

PDF, 472 KB

english, 2015

15

Harnessing the power of microbial autotrophy

Claassens, Nico J., Sousa, Diana Z., dos Santos, Vitor A. P. Martins, de Vos, Willem M., van der Oost, John

Journal:

Nature Reviews Microbiology

Year:

2016

Language:

english

File:

PDF, 533 KB

english, 2016

16

Ethyl acetate production by the elusive alcohol acetyltransferase from yeast

Kruis, Aleksander J., Levisson, Mark, Mars, Astrid E., van der Ploeg, Max, Garcés Daza, Fernando, Ellena, Valeria, Kengen, Servé W.M., van der Oost, John, Weusthuis, Ruud A.

Journal:

Metabolic Engineering

Year:

2017

Language:

english

File:

PDF, 1.31 MB

english, 2017

17

Progress of CRISPR-Cas based genome editing in Photosynthetic microbes

Naduthodi, Mihris Ibnu Saleem, Barbosa, Maria J., van der Oost, John

Journal:

Biotechnology Journal

Year:

2018

Language:

english

File:

PDF, 546 KB

english, 2018

18

Hijacking CRISPR-Cas for high-throughput bacterial metabolic engineering: advances and prospects

Mougiakos, Ioannis, Bosma, Elleke F, Ganguly, Joyshree, van der Oost, John, van Kranenburg, Richard

Journal:

Current Opinion in Biotechnology

Year:

2018

Language:

english

File:

PDF, 1.28 MB

english, 2018

19

Shooting the messenger: RNA-targeting CRISPR-Cas systems

Zhu, Yifan, Klompe, Sanne E., Vlot, Marnix, van der Oost, John, Staals, Raymond H.J.

Journal:

Bioscience Reports

Year:

2018

Language:

english

File:

PDF, 566 KB

english, 2018

20

CRISPR–Cas ribonucleoprotein mediated homology-directed repair for efficient targeted genome editing in microalgae Nannochloropsis oceanica IMET1

Naduthodi, Mihris Ibnu Saleem, Mohanraju, Prarthana, Südfeld, Christian, D’Adamo, Sarah, Barbosa, Maria J., van der Oost, John

Journal:

Biotechnology for Biofuels

Year:

2019

File:

PDF, 1.22 MB

2019

21

Multiplex Genome Editing of Microorganisms Using CRISPR-Cas

Adiego-Pérez, Belén, Randazzo, Paola, Daran, Jean Marc, Verwaal, René, Roubos, Johannes A, Daran-Lapujade, Pascale, van der Oost, John

Journal:

FEMS Microbiology Letters

Year:

2019

Language:

english

File:

PDF, 2.00 MB

english, 2019

22

High-Speed Super-Resolution Imaging Using Protein-Assisted DNA-PAINT

Filius, Mike, Cui, Tao Ju, Ananth, Adithya, Docter, Margreet W, Hegge, Jorrit W., Van Der Oost, John, Joo, Chirlmin

Journal:

Year:

2020

Language:

english

File:

PDF, 2.96 MB

english, 2020

23

Improved oligosaccharide synthesis by protein engineering of β-glucosidase CelB from hyperthermophilic Pyrococcus furiosus

Therese Hansson, Thijs Kaper, John van der Oost, Willem M. de Vos, Patrick Adlercreutz

Journal:

Biotechnology and Bioengineering

Year:

2001

Language:

english

File:

PDF, 320 KB

english, 2001

24

Halorespiring bacteria–molecular characterization and detection

Hauke Smidt, Antoon D.L Akkermans, John van der Oost, Willem M de Vos

Journal:

Enzyme and Microbial Technology

Year:

2000

Language:

english

File:

PDF, 429 KB

english, 2000

25

The catalytic potency of β-glucosidase from Pyrococcus furiosus in the direct glucosylation reaction

B. Mattheus de Roode, Tjebbe D. van der Meer, Thijs Kaper, Maurice C.R. Franssen, Albert van der Padt, John van der Oost, Remko M. Boom

Journal:

Enzyme and Microbial Technology

Year:

2001

Language:

english

File:

PDF, 138 KB

english, 2001

26

The NADH oxidase from Pyrococcus furiosus : Implications for the protection of anaerobic hyperthermophiles against oxidative stress

Donald E. Ward, Christopher J. Donnelly, Michael E. Mullendore, John van der Oost, Willem M. de Vos, Edward J. Crane III

Journal:

Year:

2001

Language:

english

File:

PDF, 1.60 MB

english, 2001

27

FnrP and NNR of Paracoccus denitrificans are both members of the FNR family of transcriptional activators but have distinct roles in respiratory adaptation in response to oxygen limitation

Rob J. M. Van Spanning, Anthonius P. N. De Boer, Willem N. M. Reijnders, Hans V. Westerhoff, Adriaan H. Stouthamer, John Van Der Oost

Journal:

Molecular Microbiology

Year:

1997

Language:

english

File:

PDF, 2.26 MB

english, 1997

28

An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi

Georges N. Cohen, Valérie Barbe, Didier Flament, Michael Galperin, Roland Heilig, Odile Lecompte, Olivier Poch, Daniel Prieur, Joël Quérellou, Raymond Ripp, Jean-Claude Thierry, John Van der Oost, Jea

Journal:

Molecular Microbiology

Year:

2003

Language:

english

File:

PDF, 523 KB

english, 2003

29

The Lrp family of transcriptional regulators

Arie B. Brinkman, Thijs J. G. Ettema, Willem M. De Vos, John Van Der Oost

Journal:

Molecular Microbiology

Year:

2003

Language:

english

File:

PDF, 204 KB

english, 2003

30

Molecular characterization of H2O2-forming NADH oxidases from Archaeoglobus fulgidus

Servé W. M. Kengen, John van der Oost, Willem M. de Vos

Journal:

Year:

2003

Language:

english

File:

PDF, 497 KB

english, 2003

31

Genetic and biochemical characterization of a short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus

John van der Oost, Wilfried G. B. Voorhorst, Servé W. M. Kengen, Ans C. M. Geerling, Vincent Wittenhorst, Yannick Gueguen, Willem M. de Vos

Journal:

Year:

2001

Language:

english

File:

PDF, 519 KB

english, 2001

32

Reconstruction of central carbon metabolism in Sulfolobus solfataricus using a two-dimensional gel electrophoresis map, stable isotope labelling and DNA microarray analysis

Ambrosius P. L. Snijders, Jasper Walther, Stefan Peter, Iris Kinnman, Marjon G. J. de Vos, Harmen J. G. van de Werken, Stan J. J. Brouns, John van der Oost, Phillip C. Wright

Journal:

Year:

2006

Language:

english

File:

PDF, 431 KB

english, 2006

33

NMR assignments and relaxation studies of Thiobacillus versutus ferrocytochrome c-550 indicate the presence of a highly mobile 13-residues long C-terminal tail

Marcellus Ubbink, Mark Pfuhl, John Van Der Oost, Axel Berg, Gerard W. Canters

Journal:

Protein Science

Year:

1996

Language:

english

File:

PDF, 2.63 MB

english, 1996

34

Temperature-dependent structural and functional features of a hyperthermostable enzyme using elastic neutron scattering

Sotirios Koutsopoulos, John van der Oost, Willem Norde

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 372 KB

english, 2005

35

Correlated mutation analyses on super-family alignments reveal functionally important residues

Remko K. P. Kuipers, Henk-Jan Joosten, Eugene Verwiel, Sjoerd Paans, Jasper Akerboom, John van der Oost, Nicole G. H. Leferink, Willem J. H. van Berkel, Gert Vriend, Peter J. Schaap

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 362 KB

english, 2009

36

Regulation of oxidative phosphorylation: The flexible respiratory network ofParacoccus denitrificans

Rob J. M. Van Spanning, Anthonius P. N. de Boer, Willem N. M. Reijnders, Jan-Willem L. De Gier, Cécile O. Delorme, Adriaan H. Stouthamer, Hans V. Westerhoff, Nellie Harms, John van der Oost

Journal:

Journal of Bioenergetics and Biomembranes

Year:

1995

Language:

english

File:

PDF, 1.43 MB

english, 1995

37

Influence of temperature on the production of an archaeal thermoactive alcohol dehydrogenase fromPyrococcus furiosuswith recombinantEscherichia coli

Jürgen Kube, Christian Brokamp, Ronnie Machielsen, John van der Oost, Herbert Märkl

Journal:

Year:

2006

Language:

english

File:

PDF, 382 KB

english, 2006

38

The non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN) ofSulfolobus solfataricus: a key-enzyme of the semi-phosphorylative branch of the Entner–Doudoroff pathway

Thijs J. G. Ettema, Hatim Ahmed, Ans C. M. Geerling, John van der Oost, Bettina Siebers

Journal:

Year:

2008

Language:

english

File:

PDF, 436 KB

english, 2008

39

Characterization of a thermostable dihydrodipicolinate synthase fromThermoanaerobactertengcongensis

Suzanne Wolterink-van Loo, Mark Levisson, Maud C. Cabrières, Maurice C. R. Franssen, John van der Oost

Journal:

Year:

2008

Language:

english

File:

PDF, 465 KB

english, 2008

40

Laboratory evolution ofPyrococcus furiosusalcohol dehydrogenase to improve the production of (2S,5S)-hexanediol at moderate temperatures

Ronnie Machielsen, Nicole G. H. Leferink, Annemarie Hendriks, Stan J. J. Brouns, Hans-Georg Hennemann, Thomas Dauβmann, John van der Oost

Journal:

Year:

2008

Language:

english

File:

PDF, 325 KB

english, 2008

41

Carboxylic ester hydrolases from hyperthermophiles

Mark Levisson, John van der Oost, Servé W. M. Kengen

Journal:

Year:

2009

Language:

english

File:

PDF, 337 KB

english, 2009

42

Functional curation of theSulfolobus solfataricusP2 andS. acidocaldarius98-3 complete genome sequences

Domink Esser, Theresa Kouril, Melanie Zaparty, Pawel Sierocinski, Patricia P. Chan, Todd Lowe, John Van der Oost, Sonja-Verena Albers, Dietmar Schomburg, Kira S. Makarova, Bettina Siebers

Journal:

Year:

2011

Language:

english

File:

PDF, 1.53 MB

english, 2011

43

Sugar utilization and its control in hyperthermophiles

W. M. de Vos, Servé W. M. Kengen, Wilfried G. B. Voorhorst, John van der Oost

Journal:

Year:

1998

Language:

english

File:

PDF, 543 KB

english, 1998

44

Activity and stability of hyperthermophilic enzymes: a comparative study on two archaeal β-glycosidases

Jeroen Pouwels, Marco Moracci, Beatrice Cobucci-Ponzano, Giuseppe Perugino, John van der Oost, Thijs Kaper, J.H.G. Lebbink, W.M. de Vos, Maria Ciaramella, M. Rossi

Journal:

Year:

2000

Language:

english

File:

PDF, 131 KB

english, 2000

45

Molecular characterization of fervidolysin, a subtilisin-like serine protease from the thermophilic bacteriumFervidobacterium pennivorans

Leon D. Kluskens, Wilfried G. Voorhorst, Roland J. Siezen, Ruth M. Schwerdtfeger, Garabed Antranikian, John van der Oost, Willem M. de Vos

Journal:

Year:

2002

Language:

english

File:

PDF, 256 KB

english, 2002

46

Occurrence of L-iduronic acid and putative D-glucuronyl C5-epimerases in prokaryotes

John Raedts, Servé W. M. Kengen, John van der Oost

Journal:

Glycoconjugate Journal

Year:

2011

Language:

english

File:

PDF, 853 KB

english, 2011

47

The terminal oxidases of Paracoccus denitrificans

Jan-Willem L. de Gier, Mathias Lübben, Willem N. M. Reijnders, Corinne A. Tipker, Dirk-Jan Slotboom, Rob J. M. van Spanning, Adriaan H. Stouthamer, John van der Oost

Journal:

Molecular Microbiology

Year:

1994

Language:

english

File:

PDF, 5.90 MB

english, 1994

48

Molecular basis of halorespiration control by CprK, a CRP-FNR type transcriptional regulator

Colin Levy, Katharine Pike, Derren J. Heyes, M. Gordon Joyce, Krisztina Gabor, Hauke Smidt, John van der Oost, David Leys

Journal:

Molecular Microbiology

Year:

2008

Language:

english

File:

PDF, 1.45 MB

english, 2008

49

Mutagenesis of a gene encoding a cytochrome o-like terminal oxidase of Azotobacter vinelandii: A cytochrome o mutant is aero-tolerant during nitrogen fixation

Diane Leung, John van der Oost, Mark Kelly, Matti Saraste, Susan Hill, Robert K. Poole

Journal:

FEMS Microbiology Letters

Year:

1994

Language:

english

File:

PDF, 441 KB

english, 1994

50

The heme-copper oxidase family consists of three distinct types of terminal oxidases and is related to nitric oxide reductase

John van der Oost, Anthonius P.N. De Boer, Jan-Willem L. de Gier, Walter G. Zumft, Adriaan H. Stouthamer, Rob J.M. Van Spanning

Journal:

FEMS Microbiology Letters

Year:

1994

Language:

english

File:

PDF, 729 KB

english, 1994